rs212360533 SNP Detail

Summary

• ID
  rs212360533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:31122135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGTTTT TTTTTTTTTT
  TTAATACAAG CAGGCGCAAG AAGAAATAAA CAACACCAGA AACACACAGT CCAGTCCTAC
  AGTTCAAGCA TTATTTCGAG AAAGTAAGTA AAAATAAAGT CCCATGTCTC CCTAGGCGAC
  AGAGGGTTCT TGCGGGGAGG CTAGGTGCAG AGCAAGCTGC AGTACGGGTT CCACATCCGA
  Y
  ATCCTGGCTC TTCCAGCGGC CTGAACTCCC GCCAACCACC TGGGACCCTA GACGACTTCA
  CCAGGTTAAC GGGGGTGACC TCTGGTGCAG AACAATCACT GTGACCCTGA CCCACGTAAA
  GTACCCCCTG AAGCTTTCCA AATGTACTGG TGGATAGCTT CAACGTCCCC TGGGAGGAGG
  AAAGCCGGGC TCCCTAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889595	CHEV_9_31018424	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212360533					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31122135 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	Intron
Gm69111	predicted gene, 69111	1185 bp upstream
Rr401293	regulatory region 401293	883 bp upstream
Rr675968	regulatory region 675968	within coordinates
Rr675969	regulatory region 675969	72 bp proximal
Rr675970	regulatory region 675970	938 bp proximal
Rr675971	regulatory region 675971	1152 bp proximal
Rr675972	regulatory region 675972	1196 bp proximal
Tssr84218	transcription start site region 84218	495 bp upstream
Tssr88644	transcription start site region 88644	1225 bp upstream
Tssr88645	transcription start site region 88645	966 bp downstream