rs212343809 SNP Detail

Summary

• ID
  rs212343809
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATTTGC TTCCAGTCCA
  GCTTAGTGAA TGGGACAAAC TTATTGGTGT TGTCTGTAGG GACATGGGTG GCTTGGGCAA
  TTGTATCATC AAAAAGCCTA CCCCAGCATG GTGACAAGTG CTCAAAGCTA GTGACATCGC
  TGGTGTCCCC ATTAGTTGAC AGTCCACCTC CAAGCAGCAG ACAGGACGGT TTGCAGGGGT
  K
  AAGCAGGAGG GAGGGATGGA GTGTTGGAAC GTCAGGGGAG GGTCTAATGA CCCCACACAC
  AGGGACTGGT ACAGGCACGA TTTTTTGAAG GCCTCCTGTA GATAATCGAA GCTGTTGGAA
  AGAAAGGGCC ACACAAGCCC AGGGAACAGA ATTCCACGCC ACACAGATCT TCTCTGTGGG
  TTGGGCTCTG CTCCAAGGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353457	CHEV_4_135452018	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212343809					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623414 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	699 bp distal
Rr602184	regulatory region 602184	405 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	769 bp proximal
Rr602187	regulatory region 602187	892 bp proximal
Rr602188	regulatory region 602188	920 bp proximal
Tssr39650	transcription start site region 39650	908 bp downstream
Tssr39651	transcription start site region 39651	707 bp downstream
Tssr39652	transcription start site region 39652	627 bp downstream