rs212304654 SNP Detail

Summary

• ID
  rs212304654
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102110005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGGTCA CACACACAAG
  CAAGTGCCCC CATATGGCTT TAACCTTCAG AGAGCCATGG AAAACTGAAA GCTATGTAGC
  AATTACCAGG ATTGTTTGTT TACTTAGAGA AGAGGCAGGC AACAATAGTG AATTGTTCCA
  AGCCACACAT AACCTCACAA AGAATCCTGC CTTTCGACTC CTACTCATAG GCTCAGTAGA
  W
  GGGAGACTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTTGGGGGGG
  GGGTCACTTT AAGGAGAAAG GAAATTAATC TCAAACAGCC TCCAGCCCAG GTGAGACCTA
  TGATTATTAA TCAGCATGAT GAGGCCCCCA TCCAATCCAA ACTACATCAG ACGCAATGCA
  AGGTGTGCCT TTGGGTATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854818	CHEV_3_102006612	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212304654					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102110005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			920 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			448 bp proximal
Rr582208	regulatory region 582208			1264 bp proximal
Rr582209	regulatory region 582209			1367 bp proximal
Rr582210	regulatory region 582210			1994 bp proximal
Tssr34830	transcription start site region 34830			1887 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant