rs212280005 SNP Detail

Summary

• ID
  rs212280005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaaaaaaaa aaaaaaaaaa Gagccgggag
  gtggtggcac atgcctttaa tcccagcact caggaggccg agttcaggat tttctgagtt
  cgaggcctgc ctggtctaca aagtgagttt caggacagcc agggctatac agagaaaccc
  Y
  gtcttggaaa aacaaaaAAC AAAAATAACA ACAAAGAATC ATACAGCctt agactgagca
  acagtacacg actttaatcc cagcgtttgg aagacagagg cagtcagata gatctctgag
  agttcaaaga cagccagagc tacaagttat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337430	CHEV_4_132477216	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212280005					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	681 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1378 bp upstream
Rr601111	regulatory region 601111	324 bp proximal
Rr601112	regulatory region 601112	1182 bp proximal
Rr601113	regulatory region 601113	1201 bp proximal
Rr601114	regulatory region 601114	1427 bp proximal
Tssr43726	transcription start site region 43726	154 bp upstream
Tssr43727	transcription start site region 43727	1186 bp downstream
Tssr43728	transcription start site region 43728	1246 bp downstream
Tssr43729	transcription start site region 43729	1289 bp downstream
Tssr43730	transcription start site region 43730	1304 bp downstream
Tssr43731	transcription start site region 43731	1319 bp downstream
Tssr43732	transcription start site region 43732	1326 bp downstream