rs212262871 SNP Detail

Summary

• ID
  rs212262871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50399923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGACTT CCCTTTTACA
  TGACCTACCC ACCTTCTGTG TAATTTGCTT TGGATCTACA AATTATCATT TTTATAAAGC
  CCAAATTAAT ACTTTTTTTC AGCGTTTTTA TTCCAAAAAA ATAATAAATG GGGAAAGTTC
  CTTACTCAAT CCTGTACAGA TTCCTCAACA GGAAATCGGA GGACTTCTCC ACCGCCTGCC
  Y
  GCCCTGTTCC ATCTCTCCTG TTCTTGCTCA AATGTCCTCT CACATAATTC TCCTGATTAA
  TGAGCATGAG GGACTCTCCC TTCTCTGTTC CATGTCTCCT GTTCTTGAGT GAACTTCCAC
  TCACATAATT CTCCAGATGA ATGAGCATAG ACAGGGCGCA GGAAGCTTTT GTTTCCTCAA
  AAGGGAACAA TAATTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357908192	MGP_WTSI_3_50249396	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212262871					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357908192	MGP_WTSI_3_50249396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50399923 () rs orientation: forward

Symbol	Name	Function Class
Rr576159	regulatory region 576159	1370 bp distal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1934 bp downstream
Tssr29027	transcription start site region 29027	1721 bp downstream
Tssr33170	transcription start site region 33170	1978 bp upstream
Tssr33171	transcription start site region 33171	1954 bp upstream
Tssr33172	transcription start site region 33172	1925 bp upstream
Tssr33173	transcription start site region 33173	1882 bp upstream
Tssr33174	transcription start site region 33174	1859 bp upstream
Tssr33175	transcription start site region 33175	1694 bp upstream