rs212249882 SNP Detail

Summary

• ID
  rs212249882
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141235311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAAAGC AATATAAACC
  TAATTGCTGA CTATCACAAA TTCTCATGTG TGTACTTCTT TTTTTCTCCA TAACACTCAA
  ATGGAAAAAA TACCGTTTCA ATTGAAGCAA TTCATCTTAC GCTGACTTAT TCCTTTATTC
  AGGACACAGG GTCTCACTAT GTAGAACAGG CGAGCCTGCC TCTGCCCCCC CACCCCCCCC
  M
  CCGTGGGTTG GGACTAAAGG TATGTGTCAC CACACTCAGC AAGAAACTCT TACATGCCAG
  GTGTGGTGGC GCACGCCTTT AATCCCAGCA CTCGGGAGGC AGCAGAGGCA GACAGATTTC
  TGAGTTCGAG GCCAGGCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAGGG CTATACAGAG
  AGACCCTGTC TCAAAAAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss363522546	MGP_WTSI_4_141063915	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs212249882					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363522546	MGP_WTSI_4_141063915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141235311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			679 bp distal
Rr603782	regulatory region 603782			869 bp distal
Rr603783	regulatory region 603783			596 bp distal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant