rs212217255 SNP Detail

Summary

• ID
  rs212217255
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41517853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCAGAG GTGGGTGAGG
  GGGGAGAGCC CCTCTGGCTG CAGTCAGGAC CCCAAGAGTT AACGGGAGCA AGCCCCTACC
  AGCGGCTCCC CGCCCCACCG TCCCCACCCT CTCCTTTGGC TGGGGATTAA AGTGCTCCCC
  CCTGTGGCAG CAGTGACCCA GAAATGAGTC TGCGTCCCCG CGCTTCCTCC GCCGCCAGCC
  K
  CACGCCCTAC CGGGAGGGCC TGGGCGCGCC GGGCCGGCCG AGCGCGCGGG CGACAGCAGG
  GGCCCGCCCG GCTCCCCGCG GGGCCTCGGT GGCCCGGACC CATGCGGCGC GGCGCGCAGC
  CCGCGGAGGC CCAGCCCGTG CGCAGCAGGT ACGCGGGGGC GGAGGCGCGG GGGCGCGCGG
  GTCGGGGTGC GCGTCTCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357685333	MGP_WTSI_3_41367340	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212217255					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357685333	MGP_WTSI_3_41367340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41517853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13118	CpG island 13118			within coordinates
Cpgi13119	CpG island 13119			1096 bp proximal
Gm31266	predicted gene, 31266			81 bp upstream
Jade1	jade family PHD finger 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr575965	regulatory region 575965			within coordinates
Rr575966	regulatory region 575966			49 bp distal
Rr575967	regulatory region 575967			270 bp proximal
Rr575968	regulatory region 575968			524 bp proximal
Rr575969	regulatory region 575969			946 bp proximal
Rr575970	regulatory region 575970			1513 bp proximal
Rr575971	regulatory region 575971			1782 bp proximal
Tssr29001	transcription start site region 29001			1694 bp downstream
Tssr29002	transcription start site region 29002			26 bp downstream
Tssr29003	transcription start site region 29003			within coordinates
Tssr29004	transcription start site region 29004			1454 bp upstream
Tssr29005	transcription start site region 29005			1503 bp upstream
Tssr29006	transcription start site region 29006			1579 bp upstream