rs212177001 SNP Detail

Summary

• ID
  rs212177001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98132145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCTCA GCCAATATGC
  AGTACAGGTT GACTAGATTG GAGGGGGTGC TTGGATGCAG GGCGGGTCTC TTCCATCTCA
  GAGGATACTG ATGATGGAAG CTTTTTTGAA AATCAATCTG TCTCTGTCTC TTTTTCTCTC
  TCAATTTCTC TCTCTTTCTC TAGTTTCTGT CTCTGTGTCT CTCTGTCTCC CTCCCCCCCC
  M
  AACCCCCCCC CCCCGCCATT CCACCCCTGT CCCTCCCCCC TCTCTGTCTT CCCACCCACC
  CTCCCCGCCC CCCTTCTCAG AAGCAAATAG AGCCTGTTTC CTGCCGACCT GAAGCGCAGT
  GATGCAGGCT GGGATCTCTT GCAAGTTTTC CGCTGTGGGG TGCCGCAACA GCTGTGACCC
  TTTCTTGATT TTGATGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	NOD/ShiLtJ	PL/J	RIIIS/J	SJL/J
ss362539265	MGP_WTSI_4_97910599	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	NOD/ShiLtJ	PL/J	RIIIS/J	SJL/J
rs212177001					SNP	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362539265	MGP_WTSI_4_97910599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98132145 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr406792	regulatory region 406792	within coordinates
Rr595714	regulatory region 595714	within coordinates
Rr595715	regulatory region 595715	192 bp distal
Rr595716	regulatory region 595716	350 bp proximal