rs212162039 SNP Detail

Summary

• ID
  rs212162039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51355813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGCAA TTCCTTCATC
  AGATCACAGC CCTCACATCT GTCATATTTT TCCTTCTTCT AAGTGTTTGG CATCTTTAGG
  GTCCACACAA AAGATTTTCT CTGCAGAAGT CCTTTTTTTC CATCAACTTT TCAAATACTT
  ATCCGGAAGA CATGTTTTAG GAATAAAGAT ATTTTATTAT TGAGATTTTT TTTTGTTTCA
  Y
  TTATTTCAGG CATTACCATC TTTATGCCAA AACGACAGAC TCAGTTTTAA TGTGTTTTAG
  GTTTTCATTG TCTTCTATCA TAATTCTAAA TATTTTACAT ATACTATTAT TTTGTTTGTT
  AGGGTTCTTA TTGACTTCAT TAGCTTCATA TAATCATCAT ATCAAATTCA TACACATATA
  CACATATATA CATACTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379530	MGP_WTSI_10_51199523	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs212162039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379530	MGP_WTSI_10_51199523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51355813 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	895 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	944 bp upstream
Rr431273	regulatory region 431273	756 bp proximal
Tssr93232	transcription start site region 93232	519 bp upstream
Tssr93233	transcription start site region 93233	1096 bp upstream
Tssr93234	transcription start site region 93234	1122 bp upstream
Tssr93235	transcription start site region 93235	1415 bp upstream
Tssr93236	transcription start site region 93236	1901 bp upstream
Tssr93237	transcription start site region 93237	1940 bp upstream
Tssr93238	transcription start site region 93238	1964 bp upstream
Tssr93239	transcription start site region 93239	1989 bp upstream
Tssr97553	transcription start site region 97553	717 bp downstream