rs212142741 SNP Detail

Summary

• ID
  rs212142741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108427497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAAGAGC AAAGTCCTGT
  TCTCCTCCCT TCCCGTAAAA CCCAGAGGCT TGAATAGAGT TCTAAGACCA GACATCTGAA
  GGAACACTCA AATTCTGCAG TCTCTGCATG ACTAAAGAGC AGCAAATAAA AATACAAGAG
  AATGAGCTAG AAGATAGATC AACAGTTAAG AACACAGGCT GCTCTTCCAG AGGCTGGTTT
  Y
  GTTCCCAGCA CCCACATGGC AGCTTACAAC TACCTCTAAC TGGTTCCTGG TGATCTGACA
  CCCTCTTCTG GTCTCTGTGG TCACAGCACA CCTGTGGTCC ACAGACATAC AAGCAGGCAA
  GACATCCATT TACATAAAAT AAAAATAAAG CTAAAGAAGA TGTCAGAGAA TACTTCATTT
  ATAAGTTGAG CCTGTTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321892723	CHEV_6_108400530	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212142741					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108427497 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	396 bp downstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636109	regulatory region 636109	1255 bp distal
Rr636110	regulatory region 636110	55 bp proximal