rs212063813 SNP Detail

Summary

• ID
  rs212063813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57514017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGTGTT AGTGACTCAC
  TAAATCTAAC AATGGCTTAT GTTGGATAGA GAATCAATTT TCATAAAGCT CTTGAAATTG
  TTACCGGATC CAGCATATAG ACAGAAAAGT GTGCATATTG AGTGTGGCTC AAGAGATCTT
  CACAACATAC AGCCTGACTT TATATCTAGC ACCTGATCAA GAAACAATGT TTTTAGTCCC
  Y
  AAGGGACCCT TCATCCTGCC GGGCATCCCA TTACTGCTTC TGTCCAGGGG CAGCCTCCAC
  GCTGACTTTT AACACAGTAG ATTAATTTTG TCTTTACACT TGGTATGTAT TAAACCATAA
  CCTACACATA CTTTTTGTTT GTTTGGCTTC TCTGGTTCAA CAACGTATGT GTAAGATGTA
  TTTTTTCATG TTGCTATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368432513	MGP_WTSI_6_57487026	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212063813					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368432513	MGP_WTSI_6_57487026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57514017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1772 bp distal
Cpgi17484	CpG island 17484	1165 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	1564 bp upstream
Rr399669	regulatory region 399669	1314 bp downstream
Rr631141	regulatory region 631141	1617 bp distal
Rr631142	regulatory region 631142	1116 bp distal
Tssr61156	transcription start site region 61156	1637 bp upstream
Tssr61157	transcription start site region 61157	1611 bp upstream
Tssr61158	transcription start site region 61158	1585 bp upstream
Tssr61159	transcription start site region 61159	1535 bp upstream
Tssr61160	transcription start site region 61160	1519 bp upstream