rs212053264 SNP Detail

Summary

• ID
  rs212053264
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137525481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGACTTA TGGCTAGCCT GAGTCCATTG
  TGTCTTCATG GAGAATCGAA AGCACTCTCC AAGGGATCGG AGTGGCTGCT GATCTCCTTC
  TGCCACCTTC TTCGCTACAC TTTCCCTGTT GTTGGTCTCT GACCCTCTAG AATTCAgttg
  W
  agaattcagc tcagtggtac agcatttgcc tatgtgcagg agaccctggg tcccagattc
  agcacagaag gaaGCAATCA CCTGAGATGG TGTCTCCCAG CATCCCTTGC TTCCCTGATC
  TCTGGGTACC ACTTTTGATG CAAGGAGGGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367549	CHEV_4_137354085	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212053264					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137525481 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1786 bp upstream
Cpgi15139	CpG island 15139	1468 bp distal
Rr602724	regulatory region 602724	1797 bp distal
Rr602725	regulatory region 602725	1841 bp distal
Rr602726	regulatory region 602726	1296 bp distal
Rr602727	regulatory region 602727	1706 bp distal
Tssr1350	transcription start site region 1350	1874 bp upstream
Tssr44149	transcription start site region 44149	1845 bp upstream
Tssr44150	transcription start site region 44150	1809 bp upstream