rs212037487 SNP Detail

Summary

• ID
  rs212037487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115750041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TACACACACA
  TATATATATA TACACACACA TATATATATA CACACACATA TATATACATA TACATATACA
  CACATACATA TATACACACA TATATATACA TATATACATA CGCATACATA CATACACACA
  CACACACACA TATATATATA TATATATATA TATATATATA TATATATATA TACACACACA
  Y
  ATACATATGT GTATGTGAGC AAGAAACTCC TAGATACAAA ATACAAATAA ATAATAATGA
  TAAAATGTAA AAAATTCCAA TTTTGTCTCC ACTGTCATTT ACTAAATAAC TGCCTAAGGT
  GCCAAGTGAT TGCTATATTT CTCCCTGGGA GTATTCACAG TCCCCTGAAG GGCTGTCTCC
  CCTTCTCATT CATGAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss369760027	MGP_WTSI_6_115723098	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs212037487					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369760027	MGP_WTSI_6_115723098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115750041 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	1477 bp upstream
Rr368154	regulatory region 368154	1114 bp upstream
Rr637052	regulatory region 637052	1944 bp distal
Rr637053	regulatory region 637053	888 bp distal
Rr637054	regulatory region 637054	668 bp distal
Rr637055	regulatory region 637055	221 bp distal
Rr637056	regulatory region 637056	234 bp distal
Rr637057	regulatory region 637057	968 bp proximal
Rr637058	regulatory region 637058	1469 bp proximal
Tssr58325	transcription start site region 58325	1484 bp upstream