rs212031060 SNP Detail

Summary

• ID
  rs212031060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121298088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCCACC TGCCTGGCAT
  TAAGGCCAGG GCACCACCAT GGCCAGGAGA GGGCACTGGA TGCCCCGGAA CTGAGTTACA
  AATGGCTATT ATTTGCAATT GAATCTGGAG ACAAACACTG TTAATAACCA TGTGGGAGTT
  GGGAATTGAA TCTGGAGACA ACTAGTGCTT TTAAACACTG CCCAATCTTT CTAGCCACCT
  Y
  GTTTGCTTGC TTGTTTGTTT TTGACAAAAC TTTTATATAG TTCAGGGTAA TCTCAACCTC
  ATGGCAATTC TCCTGCCTCA AAATCTGAAA ATGTTAGGAT TACACAAACA CAGTGCCAAG
  CTAAACAAGT AGTTTACCAA CTGAGCTGTT ACTGCTGTCC CTAAATAGAG CTTGACTTCT
  TCCCCACCTC CTGCTAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ
ss355466944	MGP_WTSI_2_121293343	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ
rs212031060					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466944	MGP_WTSI_2_121293343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121298088 () rs orientation: forward

Symbol	Name	Function Class
Mfap1b	microfibrillar-associated protein 1B	Intron
Rr563829	regulatory region 563829	141 bp distal
Rr563830	regulatory region 563830	1555 bp proximal