rs212013397 SNP Detail

Summary

• ID
  rs212013397
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54825090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GGTTTCTGCT TCAGTTTTGG
  T
  CTCCAGGGTC TTGTTTGAGT TCCTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320773095	CHEV_3_54721591	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212013397					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54825090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	1502 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576865	regulatory region 576865	1828 bp distal
Rr576866	regulatory region 576866	1652 bp distal
Rr576867	regulatory region 576867	1766 bp distal
Rr576868	regulatory region 576868	1240 bp distal
Sertm1	serine rich and transmembrane domain containing 1	1782 bp upstream
Tssr33288	transcription start site region 33288	1842 bp upstream
Tssr33289	transcription start site region 33289	1785 bp upstream
Tssr33290	transcription start site region 33290	1648 bp upstream