rs211896906 SNP Detail

Summary

• ID
  rs211896906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAATCATT TATCATCCTG
  GCCAACATTT CCATCAGACG TAAGCTATTT TATGTTTAAC TGTCCTCACA CGCTGGAACC
  CAGGTCATAG GAGCAAAAGA AAGACATGGA CACAGGAGCA CATATTCAGG AGAAGGTTCT
  CTGTGAGAGA GGACGGGTGC CACACTTCTC AAGCAGCAGG CAGGGGAGTT CTTGAAGAAA
  R
  GGACAATATT TTACTTGTCA GTAAAAGAAA CACAAATCAA CAGAAGCAAA AGCAATACTT
  TATTGATTTA GTAAATAAGA CAATCTGAGT CTAGTCATGG AGCTTGAGTC ACTACCACAT
  CAAGATTCTT GAAAAATGTC CTAGGAGACA CCGTTCTTCT TTTTTTTTTT TTAATAGCTT
  GTCAACTTTT ATTTACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091137	MGP_WTSI_6_42535178	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211896906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091137	MGP_WTSI_6_42535178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562113 () rs orientation: forward

Symbol	Name	Function Class
Gm38798	predicted gene, 38798	1626 bp upstream
Rr629347	regulatory region 629347	1372 bp distal
Rr629348	regulatory region 629348	1471 bp distal
Tssr56046	transcription start site region 56046	38 bp upstream
Tssr56047	transcription start site region 56047	171 bp upstream
Tssr56048	transcription start site region 56048	781 bp upstream
Tssr56049	transcription start site region 56049	831 bp upstream
Tssr60620	transcription start site region 60620	561 bp downstream
Tssr60621	transcription start site region 60621	579 bp downstream
Tssr60622	transcription start site region 60622	625 bp downstream
Tssr60623	transcription start site region 60623	681 bp downstream
Tssr60624	transcription start site region 60624	723 bp downstream
Tssr60625	transcription start site region 60625	791 bp downstream
Tssr60626	transcription start site region 60626	806 bp downstream
Tssr60627	transcription start site region 60627	822 bp downstream
Tssr60628	transcription start site region 60628	966 bp downstream
Tssr60629	transcription start site region 60629	1021 bp downstream
Tssr60630	transcription start site region 60630	1090 bp downstream
Tssr60631	transcription start site region 60631	1134 bp downstream
Tssr60632	transcription start site region 60632	1186 bp downstream
Tssr60633	transcription start site region 60633	1212 bp downstream
Tssr60634	transcription start site region 60634	1225 bp downstream
Tssr60635	transcription start site region 60635	1291 bp downstream
Tssr60636	transcription start site region 60636	1396 bp downstream
Tssr60637	transcription start site region 60637	1652 bp downstream
Tssr60638	transcription start site region 60638	1692 bp downstream
Tssr60639	transcription start site region 60639	1743 bp downstream
Tssr60640	transcription start site region 60640	1998 bp downstream