rs211842671 SNP Detail

Summary

• ID
  rs211842671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84512030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATATATTC CTCACACGGt ataaatattt
  aatttaatta atatttaatt tcaaatattC ACATTTGAAA TGAAACCCAA ATCTGGGTTC
  AAGCTTACTG CTTTAGCTGC ACAGTAAAGC TGTGTAGTAA GGAGACCCAC GTTTCCTACG
  Y
  ATTTCTTCAT GAATGCGGAT GAAACTTTAC AAGGTTGGTG TGCAGCTCAC TGGAGATGAA
  CAACTCTTTG TAAGGTAATA AAATCCCACA GTGATGTCTT AAAGCCAATC CAAAACTCAC
  CCCGTTGCCT GACATAGGTA ATAATTTGAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261460	CHEV_16_84715387	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211842671					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84512030 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	938 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	1807 bp downstream
Rr518521	regulatory region 518521	1495 bp distal
Rr518522	regulatory region 518522	796 bp distal
Rr518523	regulatory region 518523	1032 bp proximal
Tssr139173	transcription start site region 139173	936 bp downstream
Tssr139174	transcription start site region 139174	154 bp downstream
Tssr139175	transcription start site region 139175	55 bp downstream
Tssr139176	transcription start site region 139176	467 bp upstream