rs211827573 SNP Detail

Summary

• ID
  rs211827573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68950377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTACTAA TGTAACTTAA
  CCAGGAATTG ACATGAGAAA TTATACTTTA ACTGATTTTT TAATACTATT TCTTAGGGCT
  GGAGAGATGG CTCAGCAGTT AGGGGCATTA GCTGCTCTTT CAAAGGTCCT GAGTTCAATT
  CCCAGCAGCC ACACAGTGGC TCACAACCAC CTGAAATGGG ATCTGTTGCC CTCTCCTAGT
  R
  TGCATGTGAA GACTAATGTG AAAACAGTGT GTCTACCAAT ATACATAAAA CACAGTATTC
  AAAAAATAGT TTTTCAAAGT GAAAATATAT TTGATGGAAA ACATTCAGCA ACATATTTGC
  AATGTCAGTA TATATATATT ACCCAAAGTC AAAATTTTAC TTTTTACCAG GTTAAAATAC
  AGGACCTTGG CTCACTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313976	MGP_WTSI_3_68846966	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211827573					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313976	MGP_WTSI_3_68846966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68950377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1017 bp proximal
Gm65005	predicted gene, 65005	1806 bp upstream
Rr578116	regulatory region 578116	1406 bp distal
Rr578117	regulatory region 578117	507 bp distal
Rr578118	regulatory region 578118	848 bp proximal
Rr578119	regulatory region 578119	1701 bp proximal
Rr578120	regulatory region 578120	1838 bp proximal
Trim59	tripartite motif-containing 59	Intron
Tssr33523	transcription start site region 33523	1606 bp downstream
Tssr33524	transcription start site region 33524	1616 bp downstream
Tssr33525	transcription start site region 33525	1653 bp downstream
Tssr33526	transcription start site region 33526	1919 bp downstream
Tssr33527	transcription start site region 33527	1941 bp downstream