rs211825952 SNP Detail

Summary

• ID
  rs211825952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCCCTT CTTATCTTTG
  TCCCTTTGAG ACAAGGTTTT ACCTTGTAGC CCAGGCAAGT CCCCAACTCA CAGCAACCTC
  CATGCCTCAA TCTTCGTATT CCTGGGGTTA CAAATACGAG CCACCACAGA TGGCTTTAAA
  TTGGAACGCT GTTAGGTAAA CCATGTTTTA TTCTAATTTC ATTATGGTAT ATTGTAATGA
  R
  TACAAAATTT AAGGTAAGAA AATTCAAAGT CACTAAGGGT TTGTTGTTGC TGCTGTTGCT
  GTTTCATTTT GTTTGTTTGT TTGTTTGCAA GACAGGGGTC TCTCTGGGTA GCCTTGGCTG
  TCTTGGCACT CACTCTGTCT ATGAGGCTGG CCTCGAACTC ACAGAGATCT ACCTGCCTCT
  ACCTCCCAAG TGTGTCACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320953873	CHEV_3_127113016	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211825952					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ank2	ankyrin 2, brain			Intron
				mRNA-UTR
Gm52631	predicted gene, 52631			within coordinates
Rr584773	regulatory region 584773			1142 bp distal
Rr584774	regulatory region 584774			549 bp distal
Tssr35571	transcription start site region 35571			1211 bp upstream
Tssr35572	transcription start site region 35572			1117 bp upstream
Tssr35573	transcription start site region 35573			1090 bp upstream
Tssr35574	transcription start site region 35574			1055 bp upstream
Tssr35575	transcription start site region 35575			1034 bp upstream