rs211808449 SNP Detail

Summary

• ID
  rs211808449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCCAGG GCTAGAGCAG
  CCGTTCAGTG GGAGAAAATA GTGAAACAAG AAAGAAAATG GAAAGCCGGG CAGTGGTGGC
  GCACGCCTTT AATCCCAGCA CTCGGGAGGC AGAGGCAGGC GGATTTCTGA GTTCGAGGCC
  AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAAA CCCTGTCTCA
  R
  AAAACCAAAA AAAAAAAAAA AAAAGGAAGG AAGGAAGGAA GGAAGGAAAG AAAGAAAGAA
  AATGGAGACA GAGAAGAGAG TAGAGTAGGG AGCAGGACAC CAGGTCAGGG GTGGGGCTGA
  GGGAGTCTGG AGTCGGGCGC AGGCTTGGCT ATGCAGCAAC AGGTTTGTCA GTGTAGGGAA
  GTGGCTCCTC CTGGCCGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	CBA/J	I/LnJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss359720711	MGP_WTSI_3_130398276	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	CBA/J	I/LnJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs211808449					SNP	G	G	G	G	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359720711	MGP_WTSI_3_130398276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489007 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	760 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	559 bp downstream
Rr398016	regulatory region 398016	1019 bp downstream
Rr585194	regulatory region 585194	1005 bp distal
Rr585195	regulatory region 585195	1124 bp distal
Rr585196	regulatory region 585196	289 bp distal