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rs211792178 SNP Detail
Summary
  • ID
    rs211792178
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:110251724 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTACCTCCA CTACCCATCT
CCCCCTGCTG CATTCAGGAT CTGCCCCTCC TTCCTGCCCT TCCCAGGAAC ACCCCCTCTA
GAGTAGCTCT AGCTCCTAAA ACATCCATAC CTTTGTCCAT TTGCTTCCTT CTGCTGGGCC
TTCCTGCCTT ACCCTCTATC TGAAACCCTT ATTGATTCTT CAAGGCCCAA GTTCAAAAGT
Y
CCCTCCAGCG GGAAGCCTCC TCATTCTCCC AGAGCCAAAG TCCTGCCCAC ATCAGTTCAC
TCATAATCTT CAAACCACAT TGGTATTACC TGCTGTGTCC CCAGCCAGAC AACCCTGTAT
CTATTCACAG CTGGGCCTCC CGGGCCAGTT GCAGGTAGAA TGAATATTTC AATGATGTGT
CCCTGGAATC CTGGGAGGAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378902794 MGP_WTSI_9_110325160 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211792178 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss378902794 MGP_WTSI_9_110325160 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:110251724 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ngp neutrophilic granule protein mRNA-UTR
Tssr3020 transcription start site region 3020 1767 bp downstream
Tssr3021 transcription start site region 3021 1360 bp upstream
Tssr3022 transcription start site region 3022 913 bp upstream
Tssr3023 transcription start site region 3023 274 bp upstream
Tssr3024 transcription start site region 3024 256 bp upstream
Tssr3025 transcription start site region 3025 167 bp upstream
Tssr3026 transcription start site region 3026 118 bp upstream
Tssr3027 transcription start site region 3027 21 bp upstream
Tssr3028 transcription start site region 3028 31 bp downstream
Tssr3029 transcription start site region 3029 46 bp downstream
Tssr3030 transcription start site region 3030 67 bp downstream
Tssr3031 transcription start site region 3031 240 bp downstream
Tssr87363 transcription start site region 87363 1823 bp downstream
Tssr87364 transcription start site region 87364 1772 bp downstream
Tssr87365 transcription start site region 87365 1738 bp downstream
Tssr87366 transcription start site region 87366 949 bp downstream
Tssr87367 transcription start site region 87367 911 bp downstream
Tssr87368 transcription start site region 87368 378 bp downstream
Tssr87369 transcription start site region 87369 360 bp downstream
Tssr87370 transcription start site region 87370 310 bp downstream
Tssr87371 transcription start site region 87371 282 bp downstream
Tssr87372 transcription start site region 87372 212 bp downstream
Tssr87373 transcription start site region 87373 172 bp downstream
Tssr87374 transcription start site region 87374 150 bp downstream
Tssr87375 transcription start site region 87375 127 bp downstream
Tssr87376 transcription start site region 87376 121 bp downstream
Tssr87377 transcription start site region 87377 107 bp downstream
Tssr87378 transcription start site region 87378 56 bp downstream
Tssr87379 transcription start site region 87379 11 bp downstream
Tssr87380 transcription start site region 87380 195 bp upstream
Tssr91616 transcription start site region 91616 1782 bp upstream
Tssr91617 transcription start site region 91617 1757 bp upstream
Tssr91618 transcription start site region 91618 1737 bp upstream
Tssr91619 transcription start site region 91619 326 bp upstream
Tssr91620 transcription start site region 91620 222 bp upstream
Tssr91621 transcription start site region 91621 143 bp upstream
Tssr91622 transcription start site region 91622 81 bp upstream
Tssr91623 transcription start site region 91623 352 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory