rs211790027 SNP Detail

Summary

• ID
  rs211790027
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129025229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGCTG TGAAGCAGAT
  AAGACTTCTG AGGAAGTTAT TTTTTCCTAA TTTTATGAAT GGTGGCACTC AGTAGATAAT
  TATGGGAAAA CCCCCAAGAA ATAAAATATA AAAATCTAAG CTTACCTTTT GCTAAATAAC
  TGTGTACAGC TGCGCAGAAG GGAGTGGTGG GAAGGACAAG CCAGCCTGGG TACAGTCGAT
  G
  CCCCCCCCCC CCCCCCCCCC GGCCATGAAG CAATGGAAAA TAAAGCTGGT CTGGATGGAA
  GGCACAGTCG TGGAAAGCCA GCCCTGGCTA GACAAAGCCT TCTGGATTCT GTCCCATGGG
  CAATGGTAGA AAATCATGGC TTAATTGTGT GGGTTGGTTC CAGAGAAGTG TAGAGCCGGG
  GACAGAGCTG AAGATGTCAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ZALENDE/EiJ
ss355633842	MGP_WTSI_2_129009045	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ZALENDE/EiJ
rs211790027					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355633842	MGP_WTSI_2_129009045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129025229 () rs orientation: forward

Symbol	Name	Function Class
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	within coordinates
Rr564860	regulatory region 564860	1584 bp distal
Rr564861	regulatory region 564861	1326 bp distal
Rr564862	regulatory region 564862	193 bp distal
Rr564863	regulatory region 564863	51 bp proximal
Rr564864	regulatory region 564864	494 bp proximal
Tssr26190	transcription start site region 26190	468 bp downstream