rs211786436 SNP Detail

Summary

• ID
  rs211786436
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101195369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTACCC AGGAATTTAC
  ATTTCATCTT TAGAGTTCTT TTCCCAGGGG TGACTCTGAG TTCTTTCTGT CAGGACTGTG
  GTGAGGCTGG CAGAAGCCAC ACCCAGCAAC CTGAACCACG TGTCTTTCAT GCCTGCTGTT
  CACAGTAGGG GAGGGGGAGG GGGAGAGGGA GAGGTAGAGA TGGGGAAGGA GAGAGAGAGA
  S
  ACAGAGACCC TATCAAAACG ACTCATGCAT TTGCTGCCCT CCTTAACCGA AATAGGTGTC
  TGTGTCACAT TTTAATCTTT ACAAAAACAG CTTAGGGTGT TGGGTTTTAG CACCCCACCA
  GAGGAAGAAG AGGAACTGGG AGGTCAGTTG CCATAGCTAC CCTTTTGTAA ACAAGGGCTT
  AAACATAGCT GGCCACTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359022685	MGP_WTSI_3_101091976	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211786436					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359022685	MGP_WTSI_3_101091976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101195369 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	114 bp upstream
Rr397889	regulatory region 397889	within coordinates
Rr581991	regulatory region 581991	868 bp distal
Rr581992	regulatory region 581992	within coordinates
Rr581993	regulatory region 581993	1222 bp proximal
Tssr30895	transcription start site region 30895	1484 bp downstream
Tssr30896	transcription start site region 30896	1407 bp downstream
Tssr30897	transcription start site region 30897	1375 bp downstream
Tssr34780	transcription start site region 34780	499 bp upstream
Tssr34781	transcription start site region 34781	192 bp upstream
Tssr34782	transcription start site region 34782	160 bp upstream
Tssr34783	transcription start site region 34783	96 bp upstream
Tssr34784	transcription start site region 34784	74 bp downstream