rs211780682 SNP Detail

Summary

• ID
  rs211780682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCCTTG GAAGAGTAGT
  CCGTGATCTT AGTACAGTGT ACTTAGATAT AATAATAAAT AAATCTTTAA AAAAAAAAGA
  ATCTTGGATC CATAGAGGGT CCTGTTTTGC TGCAAATTAT ACAAGTGTCC TTAGGTATCA
  CCAGTACTTG CCCATCAGCC AGGCCATATA TGTGGGTTTG GGCTACCGCT GTTTGTGTGT
  R
  TGTGTGTGTA TGTGTCTATA TATAATTCAT TTAAGCATGC TATCAAGTCC CAGGTAATTA
  CGACCGCTAG TGAGTATGGG TAACTACTAT CTTGCAGGGA TCCCCAAGCT GTTCTTTCAT
  AGGTGGCAGC TCAGAAGGCA GAGTGCTGAG AGAGGCCCAG ATAAGCACAA CAGCACTTCT
  CTTTACTCAA CAAACCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LEWES/EiJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss359692951	MGP_WTSI_3_129384649	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LEWES/EiJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs211780682					SNP	A	A	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359692951	MGP_WTSI_3_129384649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1484 bp distal
Rr585060	regulatory region 585060			950 bp distal
Rr585061	regulatory region 585061			266 bp distal
Rr585062	regulatory region 585062			105 bp proximal
Rr585063	regulatory region 585063			716 bp proximal
Rr585064	regulatory region 585064			1728 bp proximal
Tssr35620	transcription start site region 35620			1554 bp downstream