rs211743537 SNP Detail

Summary

• ID
  rs211743537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82052338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTGGTC CCAGCAGTGG
  CTGGAACTTT GCAGTTTGTA TACTCTGGGG CTTTGAGCAG CTCCTCCATC CTCGGAGGAA
  AGCCCGCATG AGGGCCACAA GCTGGACTCT TAGGTCCTGG CGTCCTTGAA TTGCTCCCGA
  GTGAAGGATG CCACCCAGCT GCCCAGGGCT GGCGGCCTTG CGTGGGAGAC AGTCGCCCAC
  R
  CCTCGCACGT TCCCACTGCG GGACCACAGA GCTCAGCCAT AGCTGCTCCC TGACCGCTAT
  CCCTCCCGGG AGTCCCTTCC TCGCTTCTCC CCAGCGTGGG AACAGTGATC TTGCTTCCCA
  GGGGTGAACG AGATCAGGGG AGGGTGTGGG AAAGGATTTA GCCAAGACTT GGTAGAGGGC
  TGTATGCACA GGGAGTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817898	CHEV_3_81948953	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211743537					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82052338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			within coordinates
Gm29921	predicted gene, 29921			1367 bp downstream
Gm65571	predicted gene, 65571			1184 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			within coordinates
Rr578751	regulatory region 578751			32 bp proximal
Rr578752	regulatory region 578752			746 bp proximal
Tssr33784	transcription start site region 33784			707 bp downstream
Tssr33785	transcription start site region 33785			727 bp downstream
Tssr33786	transcription start site region 33786			834 bp downstream