rs211717728 SNP Detail

Summary

• ID
  rs211717728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108183841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGATAAG AAGAGAAGAG GGGACAGGAG GGGAGGGGAG
  GGGAGGGGAG GAGAGGGGAG GGGAGGGGAG GGAAGGGAAG GGAAGGGAAG GGAAGGGAAG
  R
  GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAAGTTT CTCTGGCTGG
  CCTAGAACTT GGTATGCAAC TGAGAATGAC CTTGAACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252424	CHEV_4_107999249	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211717728					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108183841 () rs orientation: forward

Symbol	Name	Function Class
Coa7	cytochrome c oxidase assembly factor 7	1508 bp upstream
Cpgi14556	CpG island 14556	1368 bp proximal
Rr367666	regulatory region 367666	1259 bp upstream
Rr398380	regulatory region 398380	403 bp upstream
Rr597153	regulatory region 597153	516 bp proximal
Rr597154	regulatory region 597154	1006 bp proximal
Tssr38289	transcription start site region 38289	1492 bp upstream