rs2020691 SNP Detail

Summary

• ID
  rs2020691
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  93
• Last Updated in dbSNP Build
  93
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120017128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

      GTCTGG NAATCAATTA TGAGCCAGAT GGCAGTTACA AGTCTTAACC CAACCGGTGA
  GAGCGGGAAG CGCTTAAACG TACGCAACCG CACCCGAGCG TGAATACGCT GCAGTCGCAG
  CCCAGGACTG GAGCGAGCTC TGAAGCGCGT TTTCCTTGTC CAAGACTATA TGAGAGGATC
  TCTGAGTGAT TTGGAAGCGG CTAAACGGAA GATTCCTTGA CTCAGTGTAT CTAGATAAAC
  TTCGCATAGA GAAGTCTTGC TATACAATTA ATATTAACTT ATCAGAAACG TTTAAAAAGA
  AGTCAGCACG TTTCCTTTTT TTTTTTTTTT GCCGAAATCT ACCATGTAAG TTTTAGGGTT
  K
  GTTTGAACCC TATGGCTGTT AAATTTAATA AAAAAGGCAG GTTGTGAACA GTTTGAAATA
  CAAGTGCAGA AGGGGCAGGA AGAATACTGA AATATTAGGG CTCTACTGTT TTAGAAAATC
  ATTAGTTCAC TTTATTAATG GTAAGTCTGT TTTAGT                          
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S6/SvEvTac	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CBA/J	DBA/2J	SWR/J
ss1565913	ERO23-253g7r_2	ERO	PANEL2	f	SNP	T	T	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S6/SvEvTac	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CBA/J	DBA/2J	SWR/J
rs2020691					SNP	T	T	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss1565913	ERO23-253g7r_2	ERO	PANEL1	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120017128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	1186 bp distal
Cpgi17917	CpG island 17917	134 bp distal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	1187 bp downstream
Rr399864	regulatory region 399864	262 bp downstream
Rr637760	regulatory region 637760	1335 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	361 bp distal
Tssr58518	transcription start site region 58518	241 bp downstream
Tssr62756	transcription start site region 62756	1804 bp upstream
Tssr62757	transcription start site region 62757	1612 bp upstream
Tssr62758	transcription start site region 62758	1531 bp upstream
Tssr62759	transcription start site region 62759	1468 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	1495 bp upstream