rs2020690 SNP Detail

Summary

• ID
  rs2020690
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  93
• Last Updated in dbSNP Build
  93
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120017124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

          GT CTGGNAATCA ATTATGAGCC AGATGGCAGT TACAAGTCTT AACCCAACCG
  GTGAGAGCGG GAAGCGCTTA AACGTACGCA ACCGCACCCG AGCGTGAATA CGCTGCAGTC
  GCAGCCCAGG ACTGGAGCGA GCTCTGAAGC GCGTTTTCCT TGTCCAAGAC TATATGAGAG
  GATCTCTGAG TGATTTGGAA GCGGCTAAAC GGAAGATTCC TTGACTCAGT GTATCTAGAT
  AAACTTCGCA TAGAGAAGTC TTGCTATACA ATTAATATTA ACTTATCAGA AACGTTTAAA
  AAGAAGTCAG CACGTTTCCT TTTTTTTTTT TTTTGCCGAA ATCTACCATG TAAGTTTTAG
  K
  GTTTGTTTGA ACCCTATGGC TGTTAAATTT AATAAAAAAG GCAGGTTGTG AACAGTTTGA
  AATACAAGTG CAGAAGGGGC AGGAAGAATA CTGAAATATT AGGGCTCTAC TGTTTTAGAA
  AATCATTAGT TCACTTTATT AATGGTAAGT CTGTTTTAGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S6/SvEvTac	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CBA/J	DBA/2J	SWR/J
ss1565912	ERO23-253g7r_1	ERO	PANEL2	f	SNP	G	G	G	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S6/SvEvTac	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CBA/J	DBA/2J	SWR/J
rs2020690					SNP	G	G	G	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss1565912	ERO23-253g7r_1	ERO	PANEL1	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120017124 () rs orientation: forward

Symbol	Name	Function Class
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	1183 bp downstream
Rr399864	regulatory region 399864	258 bp downstream
Rr637760	regulatory region 637760	1331 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	357 bp distal
Tssr58518	transcription start site region 58518	237 bp downstream
Tssr62756	transcription start site region 62756	1800 bp upstream
Tssr62757	transcription start site region 62757	1608 bp upstream
Tssr62758	transcription start site region 62758	1527 bp upstream
Tssr62759	transcription start site region 62759	1464 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	1491 bp upstream