rs16817706 SNP Detail

Summary

• ID
  rs16817706
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69283965 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGAATTCCAT CTTCTCGGTG
  GTTCTTCTGT AGGACGTGCT GAAGGGCCAG CTGAATTTTC TGTTGCAGCT TTTCTATTTT
  TACCTTTTCC TGAAGCCACG AGCGATCTAA ACATGGAAAA GTGAGACGAC TCAGCACGTT
  TCTCTAACAC AGTGTCAGAC CCATGTTCTT CTTGACCAAG ACACCCTTTA CTGTGCTATA
  S
  TGCATGTTTA AAGGCCCACA GGCCAGCTTC ACTCTTAGAA ATTTTGCTTC TGTAGGACGC
  AAAGGCAATC TCTGACATAT GCACCAGGGT GTTAAATCTT TTCACTGCCA CTGGTACTGG
  GGGGAGGGAG GGTACTTCTG CTCTTAAAGG ACAGCTACAT CATAGGACTG AAATCAAATG
  ATTGCAAGTG AACCCATAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773126	Rora_JC9845_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817706					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	G	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69283965 () rs orientation: reverse

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	Intron
Rr682167	regulatory region 682167	480 bp proximal