rs16817704 SNP Detail

Summary

• ID
  rs16817704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                            GACTTCN
  TCAGCTTTGT GTTTGAATTT GGGAAGAGTT TGTGTTCTAT GCACCTGACC GAAGACGAAA
  TCGCGTTATT TTCTGCATTC GTACTGATGT CAGCGGGTAA GGGAATCAAA CAGAAGTAGA
  NCAGTTTCTG ACTCATCCAG GTNCAGAGTG TATTCAGGAG GCACAGGACT TTTCCATGTT
  GTACGACATT GGNGGGGCTC CCAAGAGCAG CTGCCACCCT TATTAAATTT AAAGTTTTCC
  R
  AAGTATAACC ACCACCACCC CCCAACACAC AAATCTTTTC TAAAGACCTT ATgggagtga
  aaagatggct cagcggcaag agcacatgag gacctgagct cgaatctcag cacccatgtt
  aaaaAAaaga aagaaagaga gaaagagaga aagagagaga gaaaggaagg aaggaaggaa
  ggaaggaagg aaggaaggaa ggaaggaagg aagggaggga ggGAACAAAA AGGAAGCCAT
  TGAGCACAGA CACACACAGC TCCAAGTTCA GTGAGAGACC CTGTCTCAAG GGAATAAGGT
  GGAAAGT                                                          
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
ss24773123	Rora_JC9844_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
rs16817704					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282922 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	Intron
Rr682167	regulatory region 682167	1523 bp proximal