rs16817604 SNP Detail

Summary

• ID
  rs16817604
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196769 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCCTCGCCAC CTCTTTACTA
  ACCGATCACC TGTGGCGGCC CGGAAGCTCT CTGCCTTGCC TCTGACCACT TTCCACACTC
  CCTCCCGCTA CCCCCCTCCC CCTGGCACTT CAGCTAAGCA CCCTGATGCC TCTTTCAGCT
  CAGTTCCAGA ACCCTTCTCA GTGACAAAAA CACTGAATGA TTAACCCCAA AGAAGCTTTC
  S
  GTCTGAGGAA GCTACAGTCT CCCTCTTGTC CCAGGGCATC CCAGCCCCCA GGCCCGGAAC
  TGACACCAGT TTTGGGACGG AGCAAGCCCC CTCGTAAGAC TTTCAGGACT CACCCAGCTC
  ACAGCATCCA AGGTCGTAGT TCCGGGCTGC GTACTCCCGC AGCATCCCGC ATTCAAGACA
  GCCTGTATAT GTAAGACTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773005	Rora_JC9828_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	G	C	C	G	C	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817604					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C	G	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196769 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	within coordinates
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	within coordinates
Rr682145	regulatory region 682145	206 bp proximal
Tssr85839	transcription start site region 85839	1083 bp downstream
Tssr85840	transcription start site region 85840	354 bp upstream
Tssr85841	transcription start site region 85841	378 bp upstream
Tssr85842	transcription start site region 85842	415 bp upstream
Tssr85843	transcription start site region 85843	422 bp upstream