rs16817600 SNP Detail

Summary

• ID
  rs16817600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196846 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCCT GGCACTTCAG CTAAGCACCC
  Y
  GATGCCTCTT TCAGCTCAGT TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773001	Rora_JC9828_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817600					SNP	T	T	T	T	T	T	T	T	C	T	C	T	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196846 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	within coordinates
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	within coordinates
Rr682145	regulatory region 682145	129 bp proximal
Tssr85839	transcription start site region 85839	1160 bp downstream
Tssr85840	transcription start site region 85840	277 bp upstream
Tssr85841	transcription start site region 85841	301 bp upstream
Tssr85842	transcription start site region 85842	338 bp upstream
Tssr85843	transcription start site region 85843	345 bp upstream