rs16811864 SNP Detail

Summary

• ID
  rs16811864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137132963 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                       TGTGGT GGGAGGCCTT GGATAATCAA
  ANTGTGATGC TTGTGGGAAA GTGACAGNNT CCCCTGAGGa gctgcatagt ctgtgcactg
  cacatttcag agggcgctat ttttttccca tgtgaatagc angttctgga gctgtacagn
  ncatagcctg tgaagccact ggtggcancc cATGGTGTTG GGTCTGGGCC ACTCAAGCTC
  TTTCCTTCTT GGCCACCANG TCTCCCTTCA GTATGAGANG GNTGGGAGCT TCNACCATAC
  CTGTGGTGGC TCCCTCATTA CCCCTGACTG GGTTNTGACT GCNGGCCACT GCATCNNGTN
  AGTTNNATCC CCCATNCCTN TCCNACTCAC TATCCCTGCA NGTGTCCTGG GCAGCTGGNA
  CAATAGGAGA GGAGTGAGNT TGGCTCCAGG NTTATACTGA CCTCCANTCT TCTGCAGGNC
  NTNNCNCANN TACCNGGTNG TACTTGGGGA GCATGAACNT GGTNTGGAGG ANGGCNCAGA
  R
  CAGGTGATCC CCATCAANGC TGGAGAACTC TTTGTGCACC CCAAGTG              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss24767016	Ela3b_AN6773_40	ROCHEBIO	RPAMM	f	SNP	G	A	G	G	G	G	A	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs16811864					SNP	G	A	G	G	G	G	A	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137132963 () rs orientation: reverse

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Coding-Synonymous
Rr602614	regulatory region 602614	845 bp proximal