rs16811862 SNP Detail

Summary

• ID
  rs16811862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137132972 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                 TGTGGTG GGAGGCCTTG
  GATAATCAAA NTGTGATGCT TGTGGGAAAG TGACAGNNTC CCCTGAGGag ctgcatagtc
  tgtgcactgc acatttcaga gggcgctatt tttttcccat gtgaatagca ngttctggag
  ctgtacagnn catagcctgt gaagccactg gtggcanccc ATGGTGTTGG GTCTGGGCCA
  CTCAAGCTCT TTCCTTCTTG GCCACCANGT CTCCCTTCAG TATGAGANGG NTGGGAGCTT
  CNACCATACC TGTGGTGGCT CCCTCATTAC CCCTGACTGG GTTNTGACTG CNGGCCACTG
  CATCNNGTNA GTTNNATCCC CCATNCCTNT CCNACTCACT ATCCCTGCAN GTGTCCTGGG
  CAGCTGGNAC AATAGGAGAG GAGTGAGNTT GGCTCCAGGN TTATACTGAC CTCCANTCTT
  CTGCAGGNCN TNNCNCANNT ACCNGGTNGT ACTTGGGGAG CATGAACNTG GTNTGGAGGA
  R
  GGCNCAGANC AGGTGATCCC CATCAANGCT GGAGAACTCT TTGTGCACCC CAAGTG    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767014	Ela3b_AN6773_38	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811862					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137132972 () rs orientation: reverse

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Coding-Synonymous
Rr602614	regulatory region 602614	836 bp proximal