rs16811854 SNP Detail

Summary

• ID
  rs16811854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133020 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                    TGTGGTGGG AGGCCTTGGA TAATCAAANT
  GTGATGCTTG TGGGAAAGTG ACAGNNTCCC CTGAGGagct gcatagtctg tgcactgcac
  atttcagagg gcgctatttt tttcccatgt gaatagcang ttctggagct gtacagnnca
  tagcctgtga agccactggt ggcancccAT GGTGTTGGGT CTGGGCCACT CAAGCTCTTT
  CCTTCTTGGC CACCANGTCT CCCTTCAGTA TGAGANGGNT GGGAGCTTCN ACCATACCTG
  TGGTGGCTCC CTCATTACCC CTGACTGGGT TNTGACTGCN GGCCACTGCA TCNNGTNAGT
  TNNATCCCCC ATNCCTNTCC NACTCACTAT CCCTGCANGT GTCCTGGGCA GCTGGNACAA
  TAGGAGAGGA GTGAGNTTGG CTCCAGGNTT ATACTGACCT CCANTCTTCT GCAGGNCNTN
  Y
  CNCANNTACC NGGTNGTACT TGGGGAGCAT GAACNTGGTN TGGAGGANGG CNCAGANCAG
  GTGATCCCCA TCAANGCTGG AGAACTCTTT GTGCACCCCA AGTG                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767006	Ela3b_AN6773_30	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811854					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133020 () rs orientation: reverse

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Coding-Synonymous
Rr602614	regulatory region 602614	788 bp proximal