rs16811844 SNP Detail

Summary

• ID
  rs16811844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133124 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                  TGTGG TGGGAGGCCT TGGATAATCA AANTGTGATG CTTGTGGGAA
  AGTGACAGNN TCCCCTGAGG agctgcatag tctgtgcact gcacatttca gagggcgcta
  tttttttccc atgtgaatag cangttctgg agctgtacag nncatagcct gtgaagccac
  tggtggcanc ccATGGTGTT GGGTCTGGGC CACTCAAGCT CTTTCCTTCT TGGCCACCAN
  GTCTCCCTTC AGTATGAGAN GGNTGGGAGC TTCNACCATA CCTGTGGTGG CTCCCTCATT
  ACCCCTGACT GGGTTNTGAC TGCNGGCCAC TGCATCNNGT NAGTTNNATC CCCCATNCCT
  K
  TCCNACTCAC TATCCCTGCA NGTGTCCTGG GCAGCTGGNA CAATAGGAGA GGAGTGAGNT
  TGGCTCCAGG NTTATACTGA CCTCCANTCT TCTGCAGGNC NTNNCNCANN TACCNGGTNG
  TACTTGGGGA GCATGAACNT GGTNTGGAGG ANGGCNCAGA NCAGGTGATC CCCATCAANG
  CTGGAGAACT CTTTGTGCAC CCCAAGTG                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24766996	Ela3b_AN6773_20	ROCHEBIO	RPAMM	f	SNP	G	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811844					SNP	G	T	T	T	G	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133124 () rs orientation: reverse

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Intron
Rr602614	regulatory region 602614	684 bp proximal