rs16811839 SNP Detail

Summary

• ID
  rs16811839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133147 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTCT GACTGCGGGC CACTGCATCA
  Y
  GTAAGTTCCA TCCCCCATGC CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	DBA/2J	MRL/MpJ	PERA	SM/J	SPRET/EiJ
ss24766991	Ela3b_AN6773_15	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	DBA/2J	MRL/MpJ	PERA	SM/J	SPRET/EiJ
rs16811839					SNP	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133147 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cela3a	chymotrypsin-like elastase family, member 3A			Coding-NonSynonymous
				Splice-Site
Rr602614	regulatory region 602614			661 bp proximal