rs16811838 SNP Detail

Summary

• ID
  rs16811838
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133148 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATAGCACGTT CTGGAGCTGT
  ACAGCGCATA GCCTGTGAAG CCACTGGTGG CAACCCATGG TGTTGGGTCT GGGCCACTCA
  AGCTCTTTCC TTCTTGGCCA CCAGGTCTCC CTTCAGTATG AGATGGGTGG GAGCTTCCAC
  CATACCTGTG GTGGCTCCCT CATTACCCCT GACTGGGTTC TGACTGCGGG CCACTGCATC
  W
  TGTAAGTTCC ATCCCCCATG CCTTTCCCAC TCACTATCCC TGCATGTGTC CTGGGCAGCT
  GGGACAATAG GAGAGGAGTG AGATTGGCTC CAGGCTTATA CTGACCTCCA CTCTTCTGCA
  GGCCTTATCT CAACTACCGG GTGGTACTTG GGGAGCATGA ACATGGTGTG GAGGAGGGCT
  CAGAGCAGGT GATCCCCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	DBA/2J	FVB	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24766990	Ela3b_AN6773_14	ROCHEBIO	RPAMM	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	DBA/2J	FVB	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811838					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133148 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cela3a	chymotrypsin-like elastase family, member 3A			Coding-NonSynonymous
				Splice-Site
Rr602614	regulatory region 602614			660 bp proximal