rs16811830 SNP Detail

Summary

• ID
  rs16811830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133323 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                       TGTGGT GGGAGGCCTT GGATAATCAA
  ANTGTGATGC TTGTGGGAAA GTGACAGNNT CCCCTGAGGa gctgcatagt ctgtgcactg
  cacatttcag agggcgctat ttttttccca tgtgaatagc angttctgga gctgtacagn
  R
  catagcctgt gaagccactg gtggcanccc ATGGTGTTGG GTCTGGGCCA CTCAAGCTCT
  TTCCTTCTTG GCCACCANGT CTCCCTTCAG TATGAGANGG NTGGGAGCTT CNACCATACC
  TGTGGTGGCT CCCTCATTAC CCCTGACTGG GTTNTGACTG CNGGCCACTG CATCNNGTNA
  GTTNNATCCC CCATNCCTNT CCNACTCACT ATCCCTGCAN GTGTCCTGGG CAGCTGGNAC
  AATAGGAGAG GAGTGAGNTT GGCTCCAGGN TTATACTGAC CTCCANTCTT CTGCAGGNCN
  TNNCNCANNT ACCNGGTNGT ACTTGGGGAG CATGAACNTG GTNTGGAGGA NGGCNCAGAN
  CAGGTGATCC CCATCAANGC TGGAGAACTC TTTGTGCACC CCAAGTG              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24766982	Ela3b_AN6773_6	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811830					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133323 () rs orientation: reverse

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Intron
Rr602614	regulatory region 602614	485 bp proximal