rs16799742 SNP Detail

Summary

• ID
  rs16799742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGGTGA TAGCCTTCAT
  TCCAGGAATG CTGTACCCCC GACAAGGTGT CTGTCCCGTA CTGAGAAACA TCTGTATCCC
  CCAGAGAAGG CCAGATCCCT GAGACTGCCC CTTCCAGGCA AAGTGGCTTT TTACACTCTT
  TCTGGTCTTT GCCTCCCACC AGTTTAGAGC TCCCCTGGGG TGCTAGGGCT GGGATCTCAC
  R
  GAGGAATTTG TCTCTTTTAA ACACAGAAAT CTCATGAGTA AGGCAAACTC ATGAGCAAAT
  CTTCCTGGCA GCACCTCACT TGCCAGGACA CGCAGTTCCC TGGCCCTGCC TTTCGGGTAG
  AGCTACCCAG CTACTGGAGC AAACTGAGAA TGCACAGCCA GAGTGCCGAG CCCTGGACTC
  CCGACCACTC TCTCCAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24754057	Fcamr_JC9044_11	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16799742					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fcamr	Fc receptor, IgA, IgM, high affinity			Intron
				mRNA-UTR
Tssr8571	transcription start site region 8571			103 bp upstream