rs16792565 SNP Detail

Summary

• ID
  rs16792565
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:59456891 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCCTACCAGG AAATCTCGAA
  GACTATAGTC AGCTCAGGCT TTTCTTCCTG GAGCGCTTCT AAGGCACGTT TTGTTTCACG
  ATTTAAGTAC ATTTCACCCA ACCTGTGAAC ACAGAAAAGA AGCTTTGAGT TGGACTCTTC
  AGAAAACTGC AAATTAATCC AGAGAAACTC TGACTTTTGT CCCGTGGTCA CCCTCCCCTC
  W
  GCACCCCGCT CGCCTACCCC ATGAGAAGCT CTAGGCAAAC CACACTCACT GTAGGCTCTG
  CAGGAGGCAG CCCTGCTGTT TCAGCACCTC ACAGAGGGTC ACCACGCACA GATCGCCAAG
  ATCATTGTTG CCCAGGTTCA GCTTCCGAAG GCTGTGGTTG TGGGTCAGAA TTGTGGAGAG
  ATTCCAGCAG CTGTGTGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24745509	Nalp3_AN8009_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16792565					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59456891 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nlrp3	NLR family, pyrin domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr101844	transcription start site region 101844			1446 bp downstream
Tssr101845	transcription start site region 101845			125 bp downstream
Tssr101846	transcription start site region 101846			79 bp downstream
Tssr101847	transcription start site region 101847			68 bp downstream
Tssr101848	transcription start site region 101848			89 bp upstream
Tssr101849	transcription start site region 101849			198 bp upstream
Tssr101850	transcription start site region 101850			255 bp upstream
Tssr101851	transcription start site region 101851			282 bp upstream
Tssr101852	transcription start site region 101852			313 bp upstream
Tssr101853	transcription start site region 101853			334 bp upstream
Tssr101854	transcription start site region 101854			351 bp upstream
Tssr101855	transcription start site region 101855			422 bp upstream