rs16790107 SNP Detail

Summary

• ID
  rs16790107
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95434311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCATGT GACAAGCTCC
  GATTTCTTTT TAGAGTCATT TCAAGCAGCC TCCTGCTGCC AGGGACATCT TTGGAGTGAG
  CACCACACTT CAGGATGACC ATGAGGGCTC CTGGCCACGC TGCCATGTAT GTACTGTCTG
  CTTCTTTTGT TTTCTTCATA TATGGCCTTA AACATGCTCT ATCTTTTCAT CAGTCAGGCC
  V
  CTGGGATTTT AAATCTTTGC TTTCAGGAAG TAAGCTGAAA ACAAAAATCA TGCCGCCCAT
  TCGCCTCTTG TTTTTCTGAT TAGGGAGAGT CTGTTTGAGA GATTCTTGTT GGCTTAACTG
  TGTGATAACT GTGTTGTATG TGGATGCGGT GAGATTTAAA CCTGGGCTCC TGTGAAGCAT
  GAGCTGAAGG CTCACACCAT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	FVB	MOLF	SM/J	SPRET/EiJ
ss24742505	Ctss_AN7910_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	C	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	FVB	MOLF	SM/J	SPRET/EiJ
rs16790107					SNP	G	G	G	G	G	G	C	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95434311 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	Intron
Rr397840	regulatory region 397840	97 bp downstream
Rr580966	regulatory region 580966	1918 bp distal
Rr580967	regulatory region 580967	204 bp distal
Rr580968	regulatory region 580968	within coordinates
Tssr30563	transcription start site region 30563	203 bp downstream
Tssr30564	transcription start site region 30564	189 bp downstream
Tssr30565	transcription start site region 30565	129 bp downstream
Tssr30566	transcription start site region 30566	111 bp downstream