rs16790103 SNP Detail

Summary

• ID
  rs16790103
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                   CCATT TTCACTGGTG
  AGTAATAAAG ATTNNGGTNT NAAAACCANT AGTTCATTTT ACCCCAGCTG TGCCTAGAAG
  ACCACAGTGG CAGTTGGGTG TATATCCTGG TGTGAGtaag tgtgtgtgta actgtatatg
  tgtgcatgtg ggtataactg tgtgataact gtgctgtata tgtataacta tgtgtgagat
  taactgtgaa tatgtgcata ataaccatat gtatggatga atgtatgtgt ataactgtgt
  gtgaatatgt gagatancca tgtgtgtata attgtatgtt tgtGAGAGAT AACTATGTGA
  TAGAACtgtg tgtataagtg tatgtgtata actctgtgtg tgtgtgtgtg tgtgtgtgtg
  tgtgtgtntg ngtntTAAGA TCCTTTGAAC TAAAACAAAG GAACTGATGA GTGAGTATTA
  S
  ACACAATAAG TCATACATGA CTTGTGTTAA AGGATAAGAC AGGGNTTCCT AGGGAATCAT
  GNAGCAACCT GAGATTTGAG GCGCCTGATC CAAATGTCTT TATAACTAAG TGTNNCNNTC
  TCACAACNGA TGTGAANAA                                             
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	MOLF	MRL/MpJ	SM/J	SPRET/EiJ
ss24742500	Ctss_AN7909_2	ROCHEBIO	RPAMM	f	SNP	C	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	MOLF	MRL/MpJ	SM/J	SPRET/EiJ
rs16790103					SNP	C	G	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433765 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	332 bp upstream
Gm40096	predicted gene, 40096	1955 bp upstream
Gm56808	predicted gene, 56808	1569 bp upstream
Rr397840	regulatory region 397840	148 bp upstream
Rr580965	regulatory region 580965	1580 bp distal
Rr580966	regulatory region 580966	1372 bp distal
Rr580967	regulatory region 580967	51 bp proximal
Rr580968	regulatory region 580968	343 bp proximal
Tssr30563	transcription start site region 30563	323 bp upstream
Tssr30564	transcription start site region 30564	346 bp upstream
Tssr30565	transcription start site region 30565	365 bp upstream
Tssr30566	transcription start site region 30566	424 bp upstream
Tssr34486	transcription start site region 34486	1615 bp upstream
Tssr34487	transcription start site region 34487	1559 bp upstream