rs16790102 SNP Detail

Summary

• ID
  rs16790102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACCACA GTGGCAGTTG
  GGTGTATATC CTGGTGTGAG TAAGTGTGTG TGTAACTGTA TATGTGTGCA TGTGGGTATA
  ACTGTGTGAT AACTGTGCTG TATATGTATA ACTATGTGTG AGATTAACTG TGAATATGTG
  CATAATAACC ATATGTATGG ATGAATGTAT GTGTATAACT GTGTGTGAAT ATGTGAGATA
  R
  CCATGTGTGT ATAATTGTAT GTTTGTGAGA GATAACTATG TGATAGAACT GTGTGTATAA
  GTGTATGTGT ATAACTCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TAAGATCCTT
  TGAACTAAAA CAAAGGAACT GATGAGTGAG TATTAGACAC AATAAGTCAT ACATGACTTG
  TGTTAAAGGA TAAGACAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss24742499	Ctss_AN7909_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs16790102					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433609 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	488 bp upstream
Gm40096	predicted gene, 40096	1799 bp upstream
Gm56808	predicted gene, 56808	1413 bp upstream
Rr397840	regulatory region 397840	304 bp upstream
Rr580965	regulatory region 580965	1424 bp distal
Rr580966	regulatory region 580966	1216 bp distal
Rr580967	regulatory region 580967	207 bp proximal
Rr580968	regulatory region 580968	499 bp proximal
Tssr30563	transcription start site region 30563	479 bp upstream
Tssr30564	transcription start site region 30564	502 bp upstream
Tssr30565	transcription start site region 30565	521 bp upstream
Tssr30566	transcription start site region 30566	580 bp upstream
Tssr34486	transcription start site region 34486	1459 bp upstream
Tssr34487	transcription start site region 34487	1403 bp upstream