rs16790097 SNP Detail

Summary

• ID
  rs16790097
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95432576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                TG ANTCCNNGAA TGAAGTCTTG TTTACNGGTG
  TGCCTGATGG GCAAAGTCTA AGTTGTATAA GTCTGGGCGT TAGACATACT CAACCTGGAG
  GAGTGAACTT TGTAATGTGA GAAATTCTCC agatggagac atgaagatca gcaattcatg
  accagattnt gctacatagc atggtcaaga aaagtctgga ctacagggga ccccatctga
  aaaaaaaaaa GGGGGGTGGg gggcaggaaa aatggcggng ataggagcat gcgcagctcc
  ngcaccacgc ttccgttccc aagacccaca tcaggagggt aatanacacc tataacttcn
  tccaggggat ctgatgcacc cttctggcct ccaaagacat ctggactcat gtgaacaacc
  M
  cncagagaca tccacacata cataattaaa agaaaaataa aGCTCTCAAA AAGAAAAAAA
  TATGTGTATT TTAAAACATG GTGGTCAGGT TAGATGTCAT CATGGTTTGG GCTTGNATTT
  C                                                                
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	FVB	MRL/MpJ
ss24742487	Ctss_AN7907_2	ROCHEBIO	RPAMM	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	FVB	MRL/MpJ
rs16790097					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95432576 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	1521 bp upstream
Gm40096	predicted gene, 40096	766 bp upstream
Gm56808	predicted gene, 56808	380 bp upstream
Rr397840	regulatory region 397840	1337 bp upstream
Rr580964	regulatory region 580964	1160 bp distal
Rr580965	regulatory region 580965	391 bp distal
Rr580966	regulatory region 580966	183 bp distal
Rr580967	regulatory region 580967	1240 bp proximal
Rr580968	regulatory region 580968	1532 bp proximal
Tssr30563	transcription start site region 30563	1512 bp upstream
Tssr30564	transcription start site region 30564	1535 bp upstream
Tssr30565	transcription start site region 30565	1554 bp upstream
Tssr30566	transcription start site region 30566	1613 bp upstream
Tssr34486	transcription start site region 34486	426 bp upstream
Tssr34487	transcription start site region 34487	370 bp upstream