rs16790096 SNP Detail

Summary

• ID
  rs16790096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95432500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  TGANTC CNNGAATGAA
  GTCTTGTTTA CNGGTGTGCC TGATGGGCAA AGTCTAAGTT GTATAAGTCT GGGCGTTAGA
  CATACTCAAC CTGGAGGAGT GAACTTTGTA ATGTGAGAAA TTCTCCagat ggagacatga
  agatcagcaa ttcatgacca gattntgcta catagcatgg tcaagaaaag tctggactac
  aggggacccc atctgaaaaa aaaaaaGGGG GGTGGggggc aggaaaaatg gcggngatag
  gagcatgcgc agctccngca ccacgcttcc gttcccaaga cccacatcag gagggtaata
  R
  acacctataa cttcntccag gggatctgat gcacccttct ggcctccaaa gacatctgga
  ctcatgtgaa caaccncnca gagacatcca cacatacata attaaaagaa aaataaaGCT
  CTCAAAAAGA AAAAAATATG TGTATTTTAA AACATGGTGG TCAGGTTAGA TGTCATCATG
  GTTTGGGCTT GNATTTC                                               
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	DBA/2J	FVB	NZW/Lac	PERA	SM/J
ss24742486	Ctss_AN7907_1	ROCHEBIO	RPAMM	f	SNP	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	DBA/2J	FVB	NZW/Lac	PERA	SM/J
rs16790096					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95432500 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	1597 bp upstream
Gm40096	predicted gene, 40096	690 bp upstream
Gm56808	predicted gene, 56808	304 bp upstream
Rr397840	regulatory region 397840	1413 bp upstream
Rr580964	regulatory region 580964	1084 bp distal
Rr580965	regulatory region 580965	315 bp distal
Rr580966	regulatory region 580966	107 bp distal
Rr580967	regulatory region 580967	1316 bp proximal
Rr580968	regulatory region 580968	1608 bp proximal
Tssr30563	transcription start site region 30563	1588 bp upstream
Tssr30564	transcription start site region 30564	1611 bp upstream
Tssr30565	transcription start site region 30565	1630 bp upstream
Tssr30566	transcription start site region 30566	1689 bp upstream
Tssr34486	transcription start site region 34486	350 bp upstream
Tssr34487	transcription start site region 34487	294 bp upstream