rs16790024 SNP Detail

Summary

• ID
  rs16790024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACCCAGG CTGGCCTGAG ACTAGCACTA TACCTGGCCA
  GATGTTCTAT TTCAGCATTT TAAATTTTCA GTAAAAAAAA AAAATCAGTA TAAGCAAAGT
  R
  AAAACAAACA AACAAACAAA GAAAAAAACC AATGGAGAAC TGTGAGAAGG CAGGCGGAGT
  GTACGGCACC ACCAGAGACT GCTAGCCAGA ACAGTAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	NZB/BlNJ
ss24742399	Ctss_AN7916_6	ROCHEBIO	RPAMM	f	SNP			G	A		G	A	A
ss45410590	mCV24564657	ABI	CRAMUS_MOUSE	f	SNP	G	G			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	NZB/BlNJ
rs16790024					SNP	G	G	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433127 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	970 bp upstream
Gm40096	predicted gene, 40096	1317 bp upstream
Gm56808	predicted gene, 56808	931 bp upstream
Rr397840	regulatory region 397840	786 bp upstream
Rr580964	regulatory region 580964	1711 bp distal
Rr580965	regulatory region 580965	942 bp distal
Rr580966	regulatory region 580966	734 bp distal
Rr580967	regulatory region 580967	689 bp proximal
Rr580968	regulatory region 580968	981 bp proximal
Tssr30563	transcription start site region 30563	961 bp upstream
Tssr30564	transcription start site region 30564	984 bp upstream
Tssr30565	transcription start site region 30565	1003 bp upstream
Tssr30566	transcription start site region 30566	1062 bp upstream
Tssr34486	transcription start site region 34486	977 bp upstream
Tssr34487	transcription start site region 34487	921 bp upstream