rs16785978 SNP Detail

Summary

• ID
  rs16785978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:23340982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCTTTAG ATGCTGATCC
  AGACTTTAAC GGTGATCTAT GTTTTCTGAC CAACCTGGCT GCGTACAGCA CTGTTTCAGA
  TCCCATCTCT TTGTTCGCTG AATGGAAACT GTAACGAGGC ACAAGTGAGA ATTTGAGGAT
  GAGCTGCTTT TCAGTCATGC AGAAGGCCAC CTGCCACCTG AATCAAGGTG CCAAACACAT
  K
  CTCCACCCTG AGATAGCTCT CCTTGACGTA TTTTGGGGGG AGCAAAGATT TGACATTTAC
  TGTAACCCCT TCTTGTCTTT CCTCCAAGTT CTCCAGTTTA GCTTTCCTGA GTGCCAGCCT
  TGTGTGATTG GCATGATTAT GAGGCTCTGG CTGATAATGT AGTGTAAGTG TGTGTGATGA
  GGAGGGAGGT TTGAACTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24737682	Masp1_JC9223_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16785978					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:23340982 () rs orientation: forward

Symbol	Name	Function Class
Gm31077	predicted gene, 31077	within coordinates
Gm45338	predicted gene 45338	within coordinates
Masp1	MBL associated serine protease 1	1417 bp upstream
Rr513467	regulatory region 513467	1817 bp distal
Rr513468	regulatory region 513468	1595 bp distal
Rr513469	regulatory region 513469	927 bp distal
Rr513470	regulatory region 513470	within coordinates
Rtp4	receptor transporter protein 4	Intron
Tssr137721	transcription start site region 137721	1869 bp downstream
Tssr140560	transcription start site region 140560	1559 bp upstream
Tssr140561	transcription start site region 140561	1531 bp upstream
Tssr140562	transcription start site region 140562	1439 bp upstream
Tssr140563	transcription start site region 140563	1417 bp upstream
Tssr140564	transcription start site region 140564	1372 bp upstream
Tssr140565	transcription start site region 140565	1226 bp upstream