rs16784843 SNP Detail

Summary

• ID
  rs16784843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118997199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG GAGCTTAGGA TCAAACTCAG
  Y
  GAACCATGGA ATCAGCGGAG CATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss24736434	Slpi_JC8509_1	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	C	T	T	T	C
ss45232385	mCV24411822	ABI	CRAMUS_MOUSE	f	SNP		T								C
ss147324325	ENSMUSSNP5712110	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320473935	CHEV_2_118992454	CHEVERUD	SCREENING_POP	f	SNP											C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs16784843					SNP	T	T	T	T	T	C	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118997199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	604 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1070 bp upstream
Rr563425	regulatory region 563425	1104 bp distal
Rr563426	regulatory region 563426	565 bp proximal
Rr563427	regulatory region 563427	897 bp proximal
Rr563428	regulatory region 563428	1066 bp proximal
Tssr19604	transcription start site region 19604	1040 bp upstream
Tssr19605	transcription start site region 19605	1064 bp upstream