rs16784842 SNP Detail

Summary

• ID
  rs16784842
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118995847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                      TTTGAtg ngtgtgtgtg tgtgtgtgtg
  tgtgtgtgtg tgtgtgtgtg tCTTTCATTA GTGGATCCAA AGAGTTCCTG GGTGGGTGAC
  TGGAAACACA TGACCCATTG GGAGTCAAAN CTGGACTGAG ATTACGGGTG TCCATTACTC
  CAGGCTGATT TATTTTTTGT CACAGGGGGN GAAATTTGAT TGTGACAATC ACAACTTTGA
  NNTCAATAGA AGTGCTCTCA ACAGACAGAT AGTCCCAACC GCCAGCACTT TACCTACATT
  TGGTTTATAG AGTCTTTTCT TCNTCTTCAT GTTTGTGTGG GGAGGAAAGT CCTGTAAGtt
  K
  tgtgttttaa atatttattt tatgtatgtg agtactctgt agctgtcttc acacacacca
  aaagacagca tttgattcta ttacagatgg gtg                             
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	C57BL/6J
ss24736433	Slpi_JC8508_5	ROCHEBIO	RPAMM	f	SNP	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	C57BL/6J
rs16784842					SNP	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118995847 () rs orientation: forward

Symbol	Name	Function Class
Rr563424	regulatory region 563424	1929 bp distal
Rr563425	regulatory region 563425	227 bp proximal
Rr563426	regulatory region 563426	1917 bp proximal